##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane2_Index14_1.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	22806701	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.14139660093759	33.0	31.0	34.0	31.0	34.0
2	32.390821758920765	34.0	31.0	34.0	31.0	34.0
3	32.40751593139227	34.0	31.0	34.0	30.0	34.0
4	36.05669399533058	37.0	35.0	37.0	35.0	37.0
5	35.944403313745376	37.0	35.0	37.0	35.0	37.0
6	35.91720038772815	37.0	35.0	37.0	35.0	37.0
7	35.865182342680775	37.0	35.0	37.0	35.0	37.0
8	35.861256785889374	37.0	35.0	37.0	35.0	37.0
9	37.57162414678037	39.0	37.0	39.0	35.0	39.0
10-14	37.73440912826454	39.2	37.2	39.4	34.2	39.4
15-19	38.80861645005124	40.0	38.0	41.0	34.8	41.0
20-24	38.67264018588221	40.0	38.0	41.0	34.0	41.0
25-29	38.44132748528601	40.0	38.0	41.0	34.0	41.0
30-34	38.13966427674042	40.0	37.8	41.0	33.0	41.0
35-39	37.84179895198345	40.0	37.0	41.0	33.0	41.0
40-44	37.63385583035442	39.8	36.8	41.0	32.2	41.0
45-49	37.20857903999355	39.0	35.6	41.0	31.0	41.0
50-54	36.88049223778573	39.0	35.0	40.6	31.0	41.0
55-59	36.64153465246902	38.4	35.0	40.4	31.0	41.0
60-64	35.94523360480764	37.2	34.4	40.0	30.0	41.0
65-69	35.180806772535846	35.8	34.0	39.2	29.4	41.0
70-74	34.32909297140345	35.0	33.6	38.0	29.0	40.2
75-79	33.199839424386724	34.8	32.4	36.2	27.6	39.0
80-84	32.88938271256329	35.0	33.0	35.6	27.4	37.2
85-89	32.07984674328831	35.0	32.6	35.0	26.4	36.2
90	31.594810183200103	35.0	32.0	35.0	25.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
10	2.0
11	11.0
12	128.0
13	884.0
14	3876.0
15	9712.0
16	16142.0
17	22195.0
18	28099.0
19	34452.0
20	42437.0
21	50569.0
22	59319.0
23	71490.0
24	89814.0
25	117153.0
26	155519.0
27	207546.0
28	275547.0
29	357123.0
30	457263.0
31	578929.0
32	734183.0
33	949402.0
34	1283859.0
35	1846423.0
36	2891013.0
37	4348215.0
38	5064988.0
39	3028698.0
40	81710.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	26.200430074197484	13.107242047942178	10.508753823909096	50.18357405395124
2	22.38833227129167	19.561483267571226	35.24929361769596	22.800890843441145
3	25.521867454657293	21.84461049408242	23.020712202084816	29.61280984917547
4	27.580757953550584	28.232149840522748	19.52947513101522	24.657617074911446
5	29.233965052639572	30.079440248723387	21.473167031040568	19.213427667596466
6	23.997052445244055	33.09171721065664	21.824313827764918	21.08691651633439
7	21.341773049947037	18.854122467123652	37.70885441931704	22.095250063612262
8	21.526489078801884	22.154839492129966	29.184032359612207	27.134639069455947
9	21.556295808874275	21.017519408118112	31.620196115048348	25.805988667959262
10-14	24.624376586718995	26.300699710536485	24.694117966578947	24.380805736165573
15-19	24.972685385991575	25.17459661929041	25.14799736662839	24.70472062808963
20-24	24.747465734390666	25.428217349250083	25.456317417132052	24.367999499227203
25-29	24.656603015640147	25.42716973556599	25.380718864003327	24.535508384790536
30-34	24.6770106158824	25.356810245965928	25.34166971779222	24.62450942035946
35-39	24.721944857914803	25.482194483072867	25.27567635563707	24.520184303375263
40-44	24.68439540452453	25.322355477154822	25.42799388404146	24.565255234279185
45-49	24.6035594959995	25.37027084733045	25.372533391579523	24.653636265090523
50-54	24.632316434546954	25.44383471163323	25.404981933905606	24.518866919914213
55-59	24.65883915835196	25.379986952350208	25.36293220975716	24.598241679540667
60-64	24.560104068230146	25.40563914548155	25.469355855960142	24.564900930328164
65-69	24.571829296834863	25.50649394655674	25.458948143689277	24.462728612919122
70-74	24.644372406169584	25.43036432227965	25.37818866535134	24.547074606199416
75-79	24.60061729215709	25.40122429248686	25.467658143099687	24.53050027225637
80-84	24.546881056712575	25.52434222188602	25.47737275980615	24.451403961595254
85-89	24.631291468772567	25.495384228070044	25.401263941085734	24.47206036207165
90	24.36030995583491	25.601181243484582	25.59419200029816	24.44431680038235
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	76.38400412814873
2	45.18922311473281
3	55.13467730383277
4	52.23837502846202
5	48.44739272023604
6	45.08396896157844
7	43.437023113559306
8	48.66112814825783
9	47.36228447683354
10-14	49.005182322884565
15-19	49.67740601408121
20-24	49.11546523361787
25-29	49.19211140043068
30-34	49.30152003624186
35-39	49.24212916129006
40-44	49.249650638803715
45-49	49.257195761090024
50-54	49.15118335446117
55-59	49.25708083789263
60-64	49.12500499855831
65-69	49.034557909753985
70-74	49.191447012369004
75-79	49.13111756441346
80-84	48.99828501830783
85-89	49.10335183084422
90	48.80462675621725
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	4.0
1	2.5
2	3.0
3	3.5
4	4.0
5	10.5
6	16.5
7	21.5
8	32.0
9	56.5
10	74.0
11	111.0
12	179.5
13	271.0
14	418.0
15	688.0
16	1213.0
17	2072.5
18	3580.5
19	6385.5
20	8200.0
21	10995.5
22	18490.0
23	30136.0
24	45975.0
25	67898.5
26	96230.0
27	131287.0
28	170279.0
29	211613.0
30	233712.0
31	256258.0
32	302111.0
33	352051.0
34	406154.5
35	458608.5
36	513597.0
37	573872.5
38	625112.0
39	668725.0
40	691369.0
41	706303.5
42	735214.0
43	760826.0
44	777677.5
45	786463.0
46	786307.5
47	779847.5
48	778678.5
49	780232.0
50	780220.0
51	773342.5
52	766279.5
53	755599.5
54	749177.0
55	749095.0
56	737302.5
57	721063.5
58	697782.5
59	668074.0
60	653046.0
61	634870.5
62	595718.5
63	546576.0
64	491204.0
65	435569.5
66	375830.0
67	315341.5
68	259797.5
69	207522.5
70	181614.0
71	158746.5
72	116876.5
73	82277.0
74	54082.5
75	32488.5
76	18310.5
77	9700.5
78	4523.5
79	1962.5
80	1150.0
81	808.0
82	347.0
83	174.5
84	94.0
85	54.5
86	31.5
87	18.5
88	17.0
89	13.0
90	8.0
91	5.5
92	4.0
93	3.5
94	1.0
95	0.0
96	0.0
97	0.0
98	0.5
99	0.5
100	0.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.41365474120961204
2	0.0
3	0.0
4	0.0
5	0.0
6	0.0
7	0.0024729573996695093
8	0.0
9	0.0017275624387762176
10-14	0.0019362730278263394
15-19	1.9818736607280467E-4
20-24	0.001536390554688291
25-29	0.0010514453624835963
30-34	0.0015925144105673151
35-39	0.004186488874475971
40-44	0.003468278906274082
45-49	0.002267754551611827
50-54	0.0026728986362385336
55-59	6.208701556617067E-4
60-64	5.48084530068597E-4
65-69	2.6834218592158507E-4
70-74	0.004589002153358349
75-79	0.0011198463118361572
80-84	0.0017249316330318883
85-89	0.0015486676481618275
90	9.909368303640234E-4
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.2806701E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	53.70507335702028
#Duplication Level	Relative count
1	100.0
2	31.07927491437641
3	16.302940439395204
4	9.99916464789909
5	6.977278422855234
6	5.124885139086125
7	3.933464205162476
8	3.1659844624509232
9	2.6449335895079775
10++	29.61009940690001
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
AAAAA	5886800	2.9368432	5.091886	2
CCAGG	4773600	2.591761	5.1883774	1
CCTGG	4768940	2.574908	6.041768	1
GAAGA	4868585	2.549256	5.326704	2
CTTCT	4985435	2.5363874	5.3729086	1
AAGAA	4883515	2.495966	5.0908546	2
CTGGA	4622405	2.4509742	8.490832	1
TCCAG	4494355	2.3686595	5.228676	2
CTCCT	4433710	2.3097126	6.688669	1
CTGGG	4179930	2.2706199	8.053989	1
CAGGA	4182680	2.2301521	5.510032	1
CTTCA	4286340	2.1928463	5.451387	1
CCCAG	4050005	2.1855915	6.8545475	1
CTCCA	4172030	2.1854818	7.114424	1
CAGAA	4035865	2.1004477	5.238594	1
CTCTG	3918995	2.054002	6.1792927	1
CTGGC	3484960	1.8816448	5.090909	1
TGGAA	3566835	1.8573112	5.0874624	2
CTGAA	3577180	1.8514285	5.379441	1
CTCAG	3329295	1.754638	5.934701	1
CTTTG	3331870	1.7054383	5.006727	1
CTTGG	3092660	1.6307743	5.295799	1
>>END_MODULE
